[DATALAD RUNCMD] Compute OHSU/sub-0023008/ses-1
=== Do not change lines below ===
{
"chain": [],
"cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n rm -rf {outputs[0]} ;\n mkdir -p {outputs[0]} && cp {inputs[0]} {outputs[0]} && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.* && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.* && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.* && rm -f {outputs[0]}/*.nii* && gzip {outputs[0]}/*/*.nii '",
"dsid": "795cacc7-b31d-4bea-a38b-46cfd34a8b84",
"exit": 0,
"extra_inputs": [
"code/pipeline/cat12.8.1_r2042.simg"
],
"inputs": [
"inputs/ADHD200/OHSU/sub-0023008/ses-1/anat/sub-0023008_ses-1_run-1_T1w.nii.gz"
],
"outputs": [
"OHSU/sub-0023008/ses-1"
],
"pwd": "."
}
^^^ Do not change lines above ^^^
Felix Hoffstaedter
e388fe9541