21 lines
407 B
Bash
Executable file
21 lines
407 B
Bash
Executable file
#!/bin/bash
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#
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# create CVS for atlases included in CAT peprocessing and get QC
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mkdir outputs
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DS=$(basename $PWD)
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datalad get sub*/report/cat_*.xml sub*/label/cat*.xml
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for sub in sub*; do
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./code/xml2csv_run-1.py outputs/${DS}_run-1 ${sub}
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done
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for sub in sub*; do
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./code/xml2csv_run-2.py outputs/${DS}_run-2 ${sub}
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done
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for sub in sub*; do
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./code/xml2csv_run-3.py outputs/${DS}_run-3 ${sub}
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done
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